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CODATA 2002: Frontiers of
Scientific and Technical Data

Montréal, Canada — 29 September - 3 October
 

Biological Science Data

Proceedings
Table of Contents

Keynote Speakers

Invited Cross-Cutting Themes

CODATA 2015

Physical Science Data

Biological Science Data

Earth and Environmental Data

Medical and Health Data

Behavioral and Social Science Data

Informatics and Technology

Data Science

Data Policy

Technical Demonstrations

Large Data Projects

Poster Sessions

Public Lectures

Program at a Glance

Detailed Program

List of Participants
[PDF File]

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Conference Sponsors

About the CODATA 2002 Conference

 

Track I-C-2: Integrated Science for Environmental Decision-making: The Challenge for Biodiversity and Ecosystems Informatics
Track III-C-2: Proteome Database
Track III-D-2: Genetic Data Issues
Track IV-A-2: Biodiversity II
Track IV-B-2: Bioinformatics

 

Track I-C-2:
Integrated Science for Environmental Decision-making: The Challenge for Biodiversity and Ecosystems Informatics

Chairs: Gladys Cotter, U.S. Geological Survey, USA and
Bonnie Carroll, Information International Associates, USA


1. Building the US National Biological Information Infrastructure: Synergy between Regional and National Initiatives

John (Jack) Hill, Houston Advanced Research Center, USA
[abstract] [paper]

 

2. Building a Biodiversity Information Network in India — Biodiversity Informatics and Developing World: Status and Potentials
Vishwas Chavan and S. Rajan, National Chemical Laboratory, India
[abstract] [paper]

 

3. Developing and Integrating Data Resources from a North American Perspective
Jorge Soberon, CONABIO, Mexico
[abstract] [paper]



4. Ecological Informatics: a Long-Term Ecological Research Perspective
William Michener, Long Term Ecological Research Program, USA
[abstract] [paper]


5. The Global Biodiversity Information Facility (GBIF) — Challenges and Opportunities from a Global Perspective
Guy Baillargeon, Agriculture and Agri-Food Canada
[abstract] [paper]

 

Track III-C-2:
Proteome Database

Chair: Akira Tsugita, Proteomics Research Laboratory, Tsukuba, Japan

1. A Proteomic Approach to the Study of Cancer
Julio E Celis, Institute of Cancer Biology, Danish Cancer Society and Danish Centre for Human Genome Research, Denmark
[abstract] [paper]

 

2. A Proposition of XML Format for Proteomics Database
Kenichi Kamijo, T. Yamazaki and A. Tsugita, Proteomics Reseach Center, NEC Corporation, Japan
[abstract] [slides (pdf)]

 

3. Proteomics : An Important Post-genomic Tool for Understanding Gene Function
Richard J. Simpson, L. M. Connolly, D. F. Frecklington, H. Ji, G. E. Reid, M. J. Layton, and R. L. Moritz, Joint ProteomicS Laboratory (JPSL), Ludwig Institute for Cancer Research and Walter & Eliza Hall Institute for Medical Research, Melbourne, Australia
[abstract] [paper]


4. Human Kidney Glomerulus Proteome and proposition of a method for native protein profiling
Akira Tsugita, K. Miyazaki, Y. Yoshida and T. Yamamoto, NEC Proteomics Reseach Center and Niigata Univ. Medical Faculty, Japan
[abstract] [slides (html)] [slides (pdf)]


Track III-D-2:
Genetic Data Issues

Chair: H. Sugawara

1. Genetic diversity in food legumes of Pakistan as revealed through characterization, evaluation and biochemical markers
Abdul Ghafoor and Asif Javaid, Plant Genetic Resources Institute, National Agricultural Research Center, Islamabad, Pakistan
[abstract] [paper]


2. Visualization and Correction of Prokaryotic Taxonomy Using Techniques from Exploratory Data Analysis
T. G. Lilburn, American Type Culture Collection, USA
G. M. Garrity, Bergey’s Manual Trust and Department of Microbiology and Molecular Genetics, Michigan State University, USA
[abstract] [paper]



3. Towards T-cell Epitope Design
Pandjassarame Kangueane, Meena K Sakharkar, Liew K. Meow, Nanyang Centre for Supercomputing and Visualisation, MPE, Nanyang Technological University, Singapore
[abstract] [paper]



4. Intronless Genes in Eukaryotes
Meena Kishore Sakharkar and Pandjassarame Kangueane, Nanyang Technological University, Singapore
[abstract] [paper]


Track IV-A-2:
Biodiversity II


Chair: Ji Liqiang, Institute of Zoology, Chinese Academy of Sciences, China

1. Shell Biodiversity Using Animation Technology
Sung-Soo Hong, Hoseo University, Korea
Bu-Young Ahn, Kye-Jun Lee and Ji-Young Kim, Bio-Resources Informatics Department, Korea
[abstract] [paper]



2. Building the Frog Contents System Using an Animation Technology
Sung-Soo Hong, Hoseo University, Korea
Bu-Young Ahn, Korea Institute of Science & Technology Information, Korea
[abstract] [paper]



3. Biodiversity of Autotrophic Cryptogams in Antarctica
Asif Javaid, Abdul Ghafoor and Rashid Anwar, Plant Genetic Resources Institute, National Agricultural Research Center, Islamabad, Pakistan
[abstract] [paper]


4. Automatic Mapping and Monitoring of Invasive Alien Plant Species, the South African Experience
J. M. K. Kandeh, J. L. Campos dos Santos and L. Kumar, International Institute for Geo-Information Science and Earth Observation, The Netherlands
[abstract] [paper]



5. An Introduction of Chinese Biodiversity Information System
Ji Liqiang, Institute of Zoology, Chinese Academy of Sciences, China
[abstract] [paper]



6. Biodiversity Issues in Taiwan
Shang-Shyng Yang and Jong-Ching Su, National Committee for CODATA/Taiwan and Department of Agricultural Chemistry, National Taiwan University, Taiwan
[abstract] [paper (pdf)]

 

Track IV-B-2:
Bioinformatics


Chair: Takashi Kunisawa, Science University of Tokyo, Japan

1. Unweaving regulatory networks: automated extraction from literature and
statistical analysis

Andrey Rzhetsky, Columbia Genome Center, Columbia University, USA
[abstract] [paper]



2. Genome rearrangements in the clinic and in evolution
David Sankoff, Centre de recherches mathematiques, Universite de Montreal, Canada
[abstract] [paper]

 

3. PIR Integrated Databases And Data-Mining Tools For Genomic And Proteomic Research
Zhang-Zhi Hu, Winona C. Barker and Cathy H. Wu, Protein Information Resource, National Biomedical Research Foundation, Georgetown University Medical Center, Washington, DC, USA
[abstract] [slides (html)] [slides (pdf)]

 

4. Extraction of Phylogenetic Information from Gene Order Data
Takashi Kunisawa, Science University of Tokyo, Japan
[abstract] [paper]


Last site update: 15 March 2003